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SRX23826954: Pa nosocomial bloodstream infection
1 ILLUMINA (NextSeq 500) run: 1.8M spots, 508.7M bases, 227.3Mb downloads

Design: Illumina sequencing via Institut Pasteur
Submitted by: Equipe PHySE - HydroSciences Montpellier
Study: A one-year survey of Pseudomonas aeruginosa nosocomial bloodstream infection in a tertiary hospital and the role of hospital environment
show Abstracthide Abstract
To conduct systematic prospective clinical and environmental investigations of Pseudomonas aeruginosa (Pa) nosocomial bloodstream infections (BSIs) during one year in a tertiary-care hospital. Patients presenting Pa-positive blood culture after >48h of hospitalization were included. Environmental investigations were performed to track Pa source/reservoir along the pathway of cares. Clinical and environmental strains were compared by whole-genome sequencing to identify the path of contamination from hospital environment to patients.
Sample:
SAMN40251202 • SRS20649032 • All experiments • All runs
Library:
Name: 365-2
Instrument: NextSeq 500
Strategy: WGS
Source: GENOMIC
Selection: RANDOM
Layout: PAIRED
Runs: 1 run, 1.8M spots, 508.7M bases, 227.3Mb
Run# of Spots# of BasesSizePublished
SRR282147541,776,672508.7M227.3Mb2024-03-04

ID:
32128751

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